🎯 Objective
Document requirements for updated TB TRF to add WGS and tNGS test (replaces PSQ)
\uD83D\uDCCA Success metrics
Goal | Metric |
---|---|
Update TRF to include WGS and tNGS | LWP TRF/UI provides users ability to order WGS and tNGS as part of their TB test panel ordering |
\uD83C\uDF1F Milestones
\uD83D\uDDD2 Requirements
TRF Section | REQ ID# | Requirement | Data Optionality | Date Completed | Date CDPH Confirmed | Notes |
---|---|---|---|---|---|---|
Test Requested | TB-REQ-01 | ADD: Sequencing-Based DST (performed by default) Please see detailed testing algorithm on test information webpage | Required (Default) | Text “test information webpage” should be hyperlink to: http://www.aphl.org/tbdst | ||
Test Requested | TB-REQ-02 | ADD Additional test options(s): Phenotypic DST (pDST) is recommended to be performed in conjunction with sequencing-based DST, unless pDST has already been performed or will be conducted elsewhere. Please choose pDST test below (leave blank if not needed): |
|
| Add text to Test Requested Section | |
Test Requested | TB-REQ-03 | UPDATE/CHANGE:
| Optional | |||
Test Requested | TB-REQ-04 | REMOVE:
| Remove test options from TRF | |||
Test Requested | TB-REQ-05 | ADD WGS Genotyping (performed by default and data submitted to the CDC) This testing is performed by default on culture submissions or isolates obtained from submitted sediments and will be submitted to the CDC for analysis/National Surveillance. *Please confirm that you would like TB DST Reference Center to perform WGS Genotyping:
| Required |
| "Yes" option is auto-populated If NO is selected, then the genotyping is not added [currently genotyping is auto-added to all panels] | |
Test Requested | TB-REQ-06 | Remove:
| Replace list of current AOEs with list of AOEs in REQ-06 | |||
Test Requested | TB-REQ-07 | UPDATE/CHANGE:
| Optional | |||
Test Requested | TB-REQ-08 | Remove:
| ||||
SUBMITTING LABORATORY’S RESULTS | TB-REQ-09 | UPDATE/CHANGE: For the AOE Question “*Has any Rifampin resistance (RIF-R) been detected previously in the submitted specimen by molecular or growth-basted testing?”, if “Detected” is selected, CHANGE pop up window/Informational text:
| Required | |||
SUBMITTING LABORATORY’S RESULTS | TB-REQ-10 | UPDATE/CHANGE:
UPDATE/CHANGE AOE List Options to:
| Optional |
| ||
SUBMITTING LABORATORY’S RESULTS | TB-REQ-11 | UPDATE/CHANGE:
| Optional | |||
Update/Change
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| |||||
Update/Change Elevate General Comments to own section as it is for “SHIPPING” See Attachment | ||||||
\uD83C\uDFA8 User interaction and design
Open Questions
Question | Answer | Date Answered |
---|---|---|
| Answer: List of AOEs should always be visible |
|
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