Laboratory Workflow - Setting up new tests in LIS

WHO CAN TAKE THE LEAD?

Problem

State the problem situation in a way that business stakeholders will understand/empathize with it.

Codifying lab data elements with standard codes will support retention of meaning across data exhange partners

Currently the choices for codes are large and require specific knowldege on the side of the laboratorian to select them during test implementation into their LIS

Actors

(expected actions)

 

IVD vendors (provide the test information)

Lab (consume LIVD information and set up mapping into the LIS)

Objectives

Now be specific with real-world objectives that the solution will achieve.

Support correct coding for LOINC and expand to provide correct coding for SCT (qualitative results, specimen types ad maybe methods) and UCUM (units) in the lab, so that exchanged data is represented in standard vocabulary




Recommendation

Details and description of the technology plan and implementation and why.

LIDR Data elements (and where they come from / go through)

Current elements in LIVD - plus: mapping for results, specimen, units

method (with mapping)

Impact on People, Process, and Technology - Advantages

The true positive impact that your solution/project will have on organizations, including the minor positives that folks who are peripherally involved may feel. Also stress on any potential process improvements resulting in man-hour savings.

 

Impact on People, Process, and Technology - Challenges

impact on existing processes that will need to be changed, the people that will impact, and how they may be motivated to make the required changes

For it to be useful to IVD vendors, need to ensure that any data that comes off the instrument flows through the system - need request from customers.

Current LIVD file is not broadly used by IVD vendors (other thn IICC members, but even there, not all are freely sharing (some limit to customers / specific projects)

Risks and ROI

state the key risks and present mitigation plans and checkpoints for management

 

Timing

How quickly can you get this done with the resources available? If management wants a  implementation or go-to-market timeframe, state how additional resourcing/people can help achieve that.

 

Proposed Data flow

 

Manual: Person looks up entry based on manufacturer name / model either in web app or in downloaded file (excel)

Automated: During test set up in LIS, system sends query to LIDR based on manufacturer name / model or UDI and retrieves all codes for test: LOINC(s) for performed test / components of a panel (and order, if available), SNOMED CT for the specimen(s) that is (are) included in the LIS set up, UCUM for units when quantitative results, SNOMED CT codes when qualitative results; LIDR may return more than one appropirate LOINC, if LIS does not have all the additional clinical context included in the query for example for challenge tests, so a manual map selection step might still be needed.

 

 

 

Public Health Reporting

WHO CAN TAKE THE LEAD? = Riki

Problem

State the problem situation in a way that business stakeholders will understand/empathize with it.

 

Actors

(expected actions)

Laboratories

Public Health Agencies

 

Objectives

Now be specific with real-world objectives that the solution will achieve.

Narrow guidance for ideally single LOINC / SCT encoding for PH reporting

 

Recommendation

Details and description of the technology plan and implementation and why.

LIDR Data elements (and where they come from / go through)

support for additional FDA attributes like approved setting, type of test (at-home, for serial testing, pooling allowed)

Impact on People, Process, and Technology - Advantages

The true positive impact that your solution/project will have on organizations, including the minor positives that folks who are peripherally involved may feel. Also stress on any potential process improvements resulting in man-hour savings.

 

Impact on People, Process, and Technology - Challenges

impact on existing processes that will need to be changed, the people that will impact, and how they may be motivated to make the required changes

 

Risks and ROI

state the key risks and present mitigation plans and checkpoints for management

Limiting the LOINC choice is counter-productive to the goal of reporting as granular as possible, so we should support creation of content of reportable conditions, BUT NOT to the level of identifying a single LOINC.

Timing

How quickly can you get this done with the resources available? If management wants a  implementation or go-to-market timeframe, state how additional resourcing/people can help achieve that.

Initial goal is a publically available spreadsheet version - maybe a google sheet, that can be crowdsourced

Proposed Data flow

 

Manual: Person looks up entry based on manufacturer name / model either in web app or in downloaded file (excel)

Automated: PH Surveillance system may query LIDR when receiving results for a specific IVD test - based on manufacturer name / model or UDI and retrieves all allowable codes for test: LOINC(s) for performed test / components of a panel (and order, if available), SNOMED CT for the specimen that is reported, UCUM for units when quantitative results, SNOMED CT codes when qualitative results;

Alternatively PH Surveillance system may query like LIS above to set up filter for reportable conditions with appropriate codes - in this case LIDR may return more than one appropirate LOINC.

 

 

 

Understanding test performance

Use the D=Dimer use case from the Standards WG and see, if that can be used here - Raj?

Problem

State the problem situation in a way that business stakeholders will understand/empathize with it.

 

Actors

(expected actions)

 

 

Objectives

Now be specific with real-world objectives that the solution will achieve.

 

Recommendation

Details and description of the technology plan and implementation and why.

LIDR Data elements (and where they come from / go through)

additional elements around cross-reactivity, details on targets (for PCR, AG testing), positive predictive value etc

Impact on People, Process, and Technology - Advantages

The true positive impact that your solution/project will have on organizations, including the minor positives that folks who are peripherally involved may feel. Also stress on any potential process improvements resulting in man-hour savings.

 

Impact on People, Process, and Technology - Challenges

impact on existing processes that will need to be changed, the people that will impact, and how they may be motivated to make the required changes

 

Risks and ROI

state the key risks and present mitigation plans and checkpoints for management

 

Timing

How quickly can you get this done with the resources available? If management wants a  implementation or go-to-market timeframe, state how additional resourcing/people can help achieve that.

 

Proposed Data flow

 

 

 

 

 

 

Real World Evidence

WHO CAN TAKE THE LEAD?

Problem

State the problem situation in a way that business stakeholders will understand/empathize with it.

 

Actors

(expected actions)

 

 

Objectives

Now be specific with real-world objectives that the solution will achieve.

 

Recommendation

Details and description of the technology plan and implementation and why.

LIDR Data elements (and where they come from / go through)

 

Impact on People, Process, and Technology - Advantages

The true positive impact that your solution/project will have on organizations, including the minor positives that folks who are peripherally involved may feel. Also stress on any potential process improvements resulting in man-hour savings.

 

Impact on People, Process, and Technology - Challenges

impact on existing processes that will need to be changed, the people that will impact, and how they may be motivated to make the required changes

 

Risks and ROI

state the key risks and present mitigation plans and checkpoints for management

 

Timing

How quickly can you get this done with the resources available? If management wants a  implementation or go-to-market timeframe, state how additional resourcing/people can help achieve that.

 

 

 

 

 

 

 

Problem #1 (one IVD UDI instrument/kit set for multiple lab results. not unique for each result and value)

State the problem situation in a way that business stakeholders will understand/empathize with it.

Microbiology IVD vendor produces a single IVD device card with a panel of 10+ antibiotics (different cards have different # of antibiotics: see examples at https://www.biomerieux-usa.com/sites/subsidiary_us/files/prn_052570_rev_03.a_cln_idast_vitek_2_card_guide_final_art.pdf )

Each IVD instrument using a card has a single unique UDI

Each card has a single UDI for 10+ antibiotic results and their values.

Codifying lab data elements with standard codes will support retention of meaning across data exhange partners

Currently the choices for codes are large and require specific knowldege on the side of the laboratorian to select them during test implementation into their LIS

Case: 1 instrument UDI + 1 test card UDI for 10+ antibiotic result items and their values.

Additional information needed so unique instrument UDI, device test kit/card UDI for each antibiotic. What is this info and where located so unique?


Example:


instrument UDI: 1234

card UDI: 789

antibiotic:

Ampicillin

Trimethoprim / Sulfamethoxazole


(Each LIS built as separate result in LIS and would have separate LOINC. UDI all same it appears currently.)

Actors

(expected actions)

 

IVD vendors (provide the test information)

Lab (consume LIVD information and set up mapping into the LIS)

Providers (Consume LIVD and set up mapping in CPOE, including having additional data elements, so can filter external lab results for comparability of results with in-house testing

IVD vendors

LIS vendors

Middleware vendors

EHR vendors

PH lab LIMS vendors

PH agency software vendors (downstream from LIS and LIMS)

Objectives

Now be specific with real-world objectives that the solution will achieve.

Support correct coding for LOINC and expand to provide correct coding for SCT (qualitative results, specimen types ad maybe methods) and UCUM (units) in the lab, so that exchanged data is represented in standard vocabulary

Real world objectives: Uniquely identify each result and result value and combined with panel order details, provide the full meaning of the “test” and permit encoding of each discrete result and order element with LOINC and messaging in HL7 messages to PH as requested. Many LISs unable to support this currently. Most LISs internally build panel order items (to add on for billing and set antibiotics in each panel with open value fields that the IVD vendor provides values upon analysis). However, these are not trasmitted outside LIS to PH, EHR, etc. and thus unavailable for RWD/RWE/PH, etc.

Solution will work to make these essential data elements for the complete meaning of antimicrobial susceptibility testing results to all.





Recommendation

Details and description of the technology plan and implementation and why.

LIDR Data elements (and where they come from / go through)

Current elements in LIVD - plus: mapping for results, specimen, units

method (with mapping)

UDI, LIVD elements. With additional TBD elements needed in LIDR for unique ID of these items.


Impact on People, Process, and Technology - Advantages

The true positive impact that your solution/project will have on organizations, including the minor positives that folks who are peripherally involved may feel. Also stress on any potential process improvements resulting in man-hour savings.

 Moderate impact on IVD vendors. LIVD need to be produced/updated with TBD elements.

Moderate impact on LIS vendors (variable depending on current functionality. some may have high impact if less functionality currently.)

Advantages: lab results and values are interoperable with complete meaning. ability to transmit this info to PH, EHRs, use for research, clinical trials, etc.


Impact on People, Process, and Technology - Challenges

impact on existing processes that will need to be changed, the people that will impact, and how they may be motivated to make the required changes

For it to be useful to IVD vendors, need to ensure that any data comes

Some LIS vendors will need to build their antimicrobial testing as orders and results like other lab results, orders with LOINC mapping functionality.

Some LIS vendors will need to build antimicrobial susceptiblity order panels, and capabilities to incorporate in OBR4 fields/shared LIS/EHR databases in EHR funcitonality for EHR, research and PH reporting and use


Risks and ROI

state the key risks and present mitigation plans and checkpoints for management

 Will need to be broken down into exchange phases as multiple actors at each:

  1. IVD info in LIVD

  2. IVD info from device to middleware/LIS (in lab interfaces, w IHE LAW?)

  3. LIS functionality (receipt, modeling, internal use/representation)

  4. LIS outbound exchange/export (internal EHR/LIS database model, and HL7 messaging model) to EHR/PH

  5. PH lab LIMS functionality like #3 w LIS

  6. PH Agency support to receive (from #3 and #5 depending on which is doing testing/sending ELR results/values)

  7. Clinical Trials/Research systems capability to extract /receive from LIS/EHR/health IT systems for RWD/RWE.


Timing

How quickly can you get this done with the resources available? If management wants a  implementation or go-to-market timeframe, state how additional resourcing/people can help achieve that.

 Not me Emoji :wink:

Question for each actor involved in each step above.


Problem #2 (multiple unique individual IVD test result instrument/kit used to produce 3rd IVD calculated result value on IVD instrument.)

State the problem situation in a way that business stakeholders will understand/empathize with it.

IVD vendors have assays that involve 2 or more separate assays (each with own UDI test kit) performed on same instrument (with it’s own UDI), that are used in a calculated score test result and value from the IVD instrument on a patient.


One of these is the Risk of Ovarian Malignancy Algorithm (ROMA) Score using HE4 assay result values and CA125 assay result values. All calculations are produced on the IVD instrument and transmitted to lab LIS. see:https://www.mayocliniclabs.com/test-catalog/overview/62661#Performance and https://ltd.aruplab.com/Tests/Pub/2012618 (Although Roche for these examples, other IVD vendors have these assays.)

Fujirubio FDA doc shows another score based on 5 results/values: https://www.accessdata.fda.gov/cdrh_docs/pdf10/k103358.pdf

Note: IVD vendors indicate their assays should not be interchangeable with others or use interchangeable kit components. Is UDI enough to achieve or is additional info/fields needed in LIDR to support unique identification of each result/value?

Codifying lab data elements with standard codes will support retention of meaning across data exhange partners

Currently the choices for codes are large and require specific knowldege on the side of the laboratorian to select them during test implementation into their LIS

Actors

(expected actions)

 Any actor/system should have all info for complete meaning of each unique IVD assay.

IVD vendors (provide the test information)

Lab (consume LIVD information and set up mapping into the LIS)


IVD vendors

LIS vendors (both CP and AP)

Middleware vendors

EHR vendors

Hospital based Cancer registry vendors

Central Cancer Registry (PH) vendors

CDC NPCR and NIH SEER software (downstream consumer)

Clinical Trials/Research vendors (cancer research)

NIH NCI clinical trials/ oncology research reporting

Objectives

Now be specific with real-world objectives that the solution will achieve.

Support correct coding for LOINC and expand to provide correct coding for SCT (qualitative results, specimen types ad maybe methods) and UCUM (units) in the lab, so that exchanged data is represented in standard vocabulary


Support unique identification of results and values and which can be trended/displayed, used in calculations, clinican trials, research etc. and which cannot. IVD vendor test kit components and assays are not interchangeable. LOINC does not provide this uniqueness alone. What other fields are needed for LIDR, usage, and interoperability?



Recommendation

Details and description of the technology plan and implementation and why.

LIDR Data elements (and where they come from / go through)


What LIDR elements current/future are needed to support.

Current elements in LIVD - plus: mapping for results, specimen, units

method (with mapping)

Impact on People, Process, and Technology - Advantages

The true positive impact that your solution/project will have on organizations, including the minor positives that folks who are peripherally involved may feel. Also stress on any potential process improvements resulting in man-hour savings.

 IVD vendor minimal (another data element or two?)

LIS vendor (moderate) functionality to collect, store, transmit, receive, use UDI and other data elements

EHR vendors and downstream health IT (moderate) functionality to receive, store, transmit, use UDI and other data elements

Impact on People, Process, and Technology - Challenges

impact on existing processes that will need to be changed, the people that will impact, and how they may be motivated to make the required changes


see above

For it to be useful to IVD vendors, need to ensure that any data comes

Risks and ROI

state the key risks and present mitigation plans and checkpoints for management

 curenttly, EHR and LIS vendors may not realize IVD test systems (CLIA language) may not be interchangeable and build these as the same “test” order or result and comingle results, resulting in bias/impacts to decision makign including patient care and safety risks, but also RWE/RWD decisions including clinical trials, drugs, etc.

Timing

How quickly can you get this done with the resources available? If management wants a  implementation or go-to-market timeframe, state how additional resourcing/people can help achieve that.


Not me Emoji :wink:

Dependent on each actor/system.