10/25/23 CA TB LWP Weekly Meeting Notes

Anne Gaynor: X

Angela Starks:

Zenda Berrada: --

Sarah Buss: X

Lauren Cowan:

Varvara Kozyreva: --

Gretl Glick: X

Joan Mangan:

Mathew Sylvester: X

Laura Carlton: --

Stephanie Johnston:

Steven Yu: X

Andrew (ICC):

Katelyn Chen: X

Catherine Evans: X

Vova:

OOOs

• Steven OOO: Oct 30 (or 31st)

• Gretl OOO: 11/2-11/6, 11/28-12/1/2023

• Anne OOO: 10/25

• Sarah OOO: Nov 9

• APHL closed Veteran’s Day: Nov 10

TB LWP: Issue Log

Published Link: https://app.smartsheet.com/b/publish?EQBCT=1136271a8d2e4fa184ebc0833df46742

Smartsheet: https://app.smartsheet.com/sheets/8q4pGFcfXc4mmgCw5Q4CQ43j93G6ChHCjxQ5pGm1

• LWP Specimen Source Mapping: Needs to be extracted/conversion/translations from SL

  • Due date: Is a dependency for assay development, would like to review prior to mapping specimen source

TB Testing Updates Target Deadlines

• CDPH: Validation schedule for expected TB Testing:

  • tNGS should be available for ordering in StarLims Production by Jan 1, 2024

  • WGS: should be available for ordering in StarLims Production by October 1, 2023

  • PSQ: Will no longer be available for ordering as of December 31, 2023

TB LWP: WGS & tNGS TRF Updates

• Finalized TRF for review/development

  • https://aphlinformatics.atlassian.net/l/cp/WM2SWjwF

  • TRF FINAL: Updates to the TRF in progress by ICC

    • Target draft: 10/31/23

       

TB Mapping Documentation

• Review/update TB TRF > CDPH Starlims Mapping

  • See Mapping spreadsheet--any follow up items?

  • Pending confirmation from ICC of Specimen Sources mappings list and any associated transformations/updates applied in SL

  • CDPH:

    • TB: Steven Yu: Reviewed list of specimen sources with Amy from MDL LWP--this is different from the list on the TB LWP

    • ICC: Can extract the list--will try to complete/compile mappings by 11/1

    • Ras Client: TB would like to handle it differently from MDL

      • icc: Can customize for TB,

        • MDL--maps to lab director, then general tab

      • SY: If no lab director, would default from general tab (can keep that logic for right now)

        • Phone/fax number: Thinks it it being pulled from general tab

        • SY: Will keep it as it is in (currently in SB for MDL)--may change later

      • What is universally implemented for MDL/VRDL AND TB?

        • ICC: Anything that involves SL/LCs would be universally applied (Forms are segregated in SL--every form is different)

        • APHL: Provide universal changes for review to Steven prior to applying to TB LWP so we have consensus for changes and documentation

Questions

Next Steps & Action Items

• ICC: Provide current list of TB Specimen Sources and any associated mappings for review: 11/1

• ICC: Develop updated TRF for review in DEV/QC1: Target: 10/31/23