8/30/23 CA TB LWP Weekly Meeting Notes

Anne Gaynor: x

Angela Starks: --

Zenda Berrada: X

Sarah Buss: X

Lauren Cowan: --

Varvara Kozyreva: X

Gretl Glick: X

Joan Mangan: --

Mathew Sylvester: X

Stephanie Johnston: --

Steven Yu: x

Katelyn Chen: --

OOOs

• Varvara: Potential jury duty: Week of 9/5

• Gretl OOO: Sept 28-Oct 2

• Anne OOO: Sep 13-15

• Steven OOO: Sep 7, Sep 18-19

TB LWP: Issue Log

Published Link: https://app.smartsheet.com/b/publish?EQBCT=1136271a8d2e4fa184ebc0833df46742

Smartsheet: https://app.smartsheet.com/sheets/8q4pGFcfXc4mmgCw5Q4CQ43j93G6ChHCjxQ5pGm1

Weekly Meeting Cadence

Potential timeslots:

• Tuesdays:

  • 2:30pmET/11:30AMPT:

    •  

  • 3PMET/12PMPT:

    • Zenda, Matt, Varvara

• Wednesdays:

  • 2PMET/11AMPT

    • CDC monthly meeting: Wed at 2pm-4th wed/month

    • Potential email checkpoint if items are not covered

    • APHL Zoom lines

    • CDPH--Wednesdays are shipping days so would prefer 1:30pm

    • Stick with 2 pm meeting timeslot

• Fridays:

  • 2pmET/11AM PT

TB Issue Log Notes

• Issue 135, 139, 141: TAT Calculations

  • APHL: Potential edge cases, discussed with CDC (they are aware that there is some variability with TAT calculations if edge cases occur)--proposal: close issues, monitor TAT in production

  • @Gretl Glick check to confirm code updates are deployed to production

  • Ok with holding on testing, given additional changes to TRF

  • If new code is in production, is data resynced and TAT can be updated--Steven can review updated data

TB Testing Updates Target Deadlines

• CDPH: Validation schedule for expected TB Testing:

  • tNGS should be available for ordering in StarLims Production by Jan 1, 2024

  • WGS: should be available for ordering in StarLims Production by October 1, 2023

  • PSQ: Will no longer be available for ordering as of December 31, 2023

TB LWP: WGS & tNGS TRF Updates

• Potential proposed phases:

  • Phase 1: Update/test/deploy new TRF and PDF results report

  • Phase 2: Update/test/deploy discrete results parsing

• Pending: Finalized TRF for review/development

  • CDC provided comments-CDPH updated slide 3, but not sure if additional updates are needed

  • Potential updates AOEs

  • Final TRF: Target: 9/6/23

Next Steps & Action Items

• APHL: Confirm LWP functionality with ICC

  • If test ordered in LWP, can this trigger different workflows? Yes

  • If WGS is added manually to test panel in StarLims by CDPH lab staff, will the results sync back to the LWP (e.g. be included on the PDF results report for review by submitter)? Yes

• APHL: Assess ICC resource availability, determine development, deployment schedule

• CDPH: Provide updated Test Requisition Form for review to APHL/ICC : Target: 9/6/23

• @Gretl Glick : Confirm code updates for Issues 135, 139, 141 have been applied in production

  • If not in prod, have code applied in production, re-sync data to correct any TAT calculations

  • CDPH to review re-synced data, confirm TAT correct

• @Gretl Glick Send out new meeting invite for Wednesdays at 2pmET/11amPT