9/27/23 CA TB LWP Weekly Meeting Notes

Anne Gaynor: X

Angela Starks:

Zenda Berrada: --

Sarah Buss: X

Lauren Cowan: X

Varvara Kozyreva: X

Gretl Glick: X

Joan Mangan:

Mathew Sylvester: X

Laura Carlton: X

Stephanie Johnston:

Steven Yu: X

Andrew (ICC):

Katelyn Chen: X

Catherine Evans: X

OOOs

• Gretl OOO: Sept 28-Oct 2

• Steven OOO: Oct 2, 9, 12, 16, 30

• Sarah OOO: Oct 10-12 (limited availability, on site meetings)

• Indigenous People’s Day: Oct 9

TB LWP: Issue Log

Published Link: https://app.smartsheet.com/b/publish?EQBCT=1136271a8d2e4fa184ebc0833df46742

Smartsheet: https://app.smartsheet.com/sheets/8q4pGFcfXc4mmgCw5Q4CQ43j93G6ChHCjxQ5pGm1

• LWP Specimen Source Mapping: Needs to be extracted/conversion/translations from SL

  • Due date: Is a dependency for assay development, would like to review prior to mapping specimen source

  • Mapping working session scheduling

TB Testing Updates Target Deadlines

• CDPH: Validation schedule for expected TB Testing:

  • tNGS should be available for ordering in StarLims Production by Jan 1, 2024

  • WGS: should be available for ordering in StarLims Production by October 1, 2023

  • PSQ: Will no longer be available for ordering as of December 31, 2023

TB LWP: WGS & tNGS TRF Updates

• Finalized TRF for review/development

  • https://aphlinformatics.atlassian.net/l/cp/WM2SWjwF

  • TRF FINAL: No changes, approved for development

    • Next: Determine project schedule for development updates

  • SL Updates in progress

  • TRF Updates --relatively quick to complete, additional time needed for SL Mapping/ User/Regression testing

Notes

• Potential different mapping for TB Reference Center

  • CDPH to discuss internally and confirm potential updates (will provide any updates, if relevant).

  • Review Mappings

Next Steps & Action Items

• CDPH: Confirm updated mappings for review to APHL/ICC : Target: 9/22/23

• ICC/APHL: Confirm project schedule for TRF Development & Mapping: 9/27/23

• ICC/APHL: Working on finalizing the project schedule

July-August Testing

1. July-August Testing

   1. Challenges or issues faced?

   2. Communication with submitting labs

   3. Specimen shipping/receipt to DST and Genotyping Lab

   4. Result Reporting / ETOR

Incident Tracking

1. Non-conforming events

2. Fed-Ex shipping

tNGS and WGS Updates

1. tNGS and WGS Updates

   1. tNGS

   2. WGS

LWP/ETOR changes / contract

Other Updates

1. Other Updates

   1. Staffing

   2. Supply Shortages

Customer satisfaction survey

Upcoming Deliverables

1. Upcoming Deliverables

   1. September Reports Due October 15, 2023