1/3/24 CA TB LWP Weekly Meeting Notes

OOOs

Steven: 1/8, 1/22

Varvara: 1/4

Gretl: 1/12

TB LWP: Issue Log

Published Link: https://app.smartsheet.com/b/publish?EQBCT=1136271a8d2e4fa184ebc0833df46742

Smartsheet: https://app.smartsheet.com/sheets/8q4pGFcfXc4mmgCw5Q4CQ43j93G6ChHCjxQ5pGm1

1. Issue 165: Incorrect mapping of comments and culture type open

   1. 12/27: Updates submitted on smartsheet, will need to follow up with ICC

   2. 1/3: ask iConnect to leave the current mapping of general comments to LIMS specimen comment as is? We want to map culture type selection to be mapped to Comment 2 in the Enviro Suppl tab in LIMS

2. Issue 168: TRF Update; Submitter Requested test open

   1. 12/20: update that the field has been correct

   2. 12/27: Issue reopened because this is sometimes not working for Seq DST Code, can’t seem to figure out the pattern

   3. 1/3: Will have to send back in a different field so that it may be exposed in data grid. ICC to collaborate on field that needs to be used. These orders will not need new mappings. Will technically be taking multiple orders that are already mapped and combining them into data field Client request, that keep test req for, column and have additional options separated by comma

3. Issue 170: Preapproval question mandatory for mixed non-viable cultures Resolved Ready for restest

4. Issue 171: User Password asking for reset every time they sign in open

   1. User resetting pw everytime they sign on

   2. 1/3: No updates

5. Issue 172: TBGenotyping CDC_WGS Open

   1. 1/3: ICC to make corrections

6. Issue 173: Bronchial washing source lower case Open

   1. 1/3: ICC to make corrections

7. Issue 167: Marked as resolved but need to amend two items

   1. 1/3: In the result column would like to see “ Pending”

   2. Incorrect setup date analyte – should be DST 1^st Line Setup date (not DST 1^st Line Setup date Alternate as highlighted below)

TB Testing Updates Target Deadlines

• CDPH: Validation schedule for expected TB Testing:

  • tNGS should be available for ordering in StarLims Production by Jan 1, 2024

    • 11/22/23: Validation in progress (placeholders in place?): Current Target: Jan 31, 2024

  • WGS: should be available for ordering in StarLims Production by October 1, 2023

    • 12/7/23: Moved to StarLims Production Complete

  • PSQ: Will no longer be available for ordering as of December 31, 2023

    • 12/6: Verified that the PSQ would return, working similar to a reflex test.

  • WGS go-live--roll out to submitters/ready for ordering:

    • Webinar for submitters: Jan 2024

    • Ideal path forward: Go-Live when validation is complete, in SL production, and LWP is ready for production deployment

    • 12/6: Final package is under review with the Lab Director.

    • 12/20 Approved; Share with CDC , Sync with Vavara

    • RISK: TB Testing SHUTS DOWN if PSQ runs out--which may happen in January. Enough reagent to March

• Project Schedule: https://app.smartsheet.com/b/publish?EQBCT=ea47c05f36e245439ca44e53c66696a1

  • Targeted Testing complete 12/22/23

    • 12/20: Need an update from Katelyn on progress with testing and if we are still on track.

  • SB deployment 1/10/24

  • Production 1/16/24

    • 12/20: Discussion on if we had to push out, the latest we would like to propose is 1/23

    • SB deployment testing 1/10-1/16. Go or no go determined, request production deployment 1/23

    • Update to Production 1/23/24

TB LWP: WGS & tNGS TRF Updates

• TRF FINAL: Updates to the TRF complete.

  • TRF Updates: Draft completed in FB1, QC1--Available for review: https://qc1.labwebportal.com/cdph/#/auth/login

  • Discussion on the timing of web page updates concerning the availability of PSQ and TN for submitters. Consideration of a tiered approach for whole genome sequencing versus TN NGS rollout.

Outstanding Questions

Next Steps & Action Items

Fixes implemented to all open issues above by 1/5

CDPH to rested 1/8-1/9

Resolutions to open issues

ICC

January 5, 2024

2nd Round trip testing

Kathelyn/Steve

January 9, 2024

User Guide Updates

Ann/ APHL

TBD- before Production Deployment

Website update

Varvara/APHL

TBD- before Production Deployment