2024-02-08 LabMCoP Meeting Notes

Date

Feb 8, 2024

Attendees

 

Present

Name

Organization

Present

Name

Organization

X

Nancy Cornish

CDC

X

Manjula Gama-Ralalage

CDC

X

Riki Merrick

APHL

X

Christina Gallegos

APHL

X

Amy Liu

Inductive Health / APHL

X

Raj Dash

Duke / CAP

X

John Snyder

National Library of Medicine (SNOMED CT)

 

Andrea Pitkus

UW

X

Kathy Walsh

Labcorp

 

Rob Hausam

Hausam Consulting

 

Doug Franklin

APHL

 

Pam Banning

 3M

Discussion topics

Topic

Discussed?

Notes

Topic

Discussed?

Notes

Upcoming OOO

Yes

  • Christina OOO: 2/29

Previous Action Items

Yes

Modeling donor organs / parts

No

  • Outreach out to Jane Pollack (jpollack@nmdp.org) at NMDP. was successful - schedule call for this topic - waiting for answer on what date will work

    • Nancy/Amy to reach out to Jane Pollack

    • Another contact: Scott A. Brubaker Division of Human Tissues, Office of Cellular Therapy and Human Tissue CMC, Office of Therapeutic Products, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland, USA

      • Incomplete tissue product tracing during an investigation of a tissue-derived tuberculosis outbreak - ScienceDirect

  • Should we make pre-coordinated terms, or support use of type modifiers?

Specimen CMT - review of terms with questions

 No

Specimen CMT pilot implementers

 

Specimen CMT - Hosting Options

 

  • How can we publish the content in the dB?

    • Allow access somehow to query the dB

    • as access or excel or csv

    • Using FHIR conceptMap similar to Conceptmap-example-specimen-type - FHIR v6.0.0-cibuild - based on this profile: ConceptMap - FHIR v6.0.0-cibuild

    • @riki.merrick to ask Eric if he still has that or how he built it:

    • ANSWER FROM ERIC:

      • if you look in the xml source Conceptmap-example-specimen-type.xml - FHIR v6.0.0-cibuild . you can see how it is mapped. 

      • I am not sure if you mean the table rendering or creating the concept map from a spreadsheet or CSV file.  The FHIR build tool did the table rendering for that mapping, I think I entered the data by hand, or Grahame did it. It would not be hard to create a script to create a concept map from an excel or csv file if needed.  The table needs to be large enough to make it worthwhile though. you could even create formula cells in the spreadsheet to generate the XML or json for each item. and then copy to a text editor and append to the Metadata fields.

Specimen CMT - education

 

 

Specimen CMT - tracking implementation impact

  • Setting baseline

  • Define metrics

 

 

Specimen CMT - Compare to NHS Medical Terminology testing

 

 

USCDI v5 draft

 

https://www.healthit.gov/isa/united-states-core-data-interoperability-uscdi#draft-uscdi-v5 has been published - comments due by April 5, 2024

LOINC to SNOMED CT mapping

 

 

Reporting Biomarkers to Cancer registries

 

National Program of Cancer Registries (NPCR) | CDC

Sandy will put together a one-pager

Future projects for this call after CMT

 

  • In general the call is intended as a forum for ANY messaging related issues to work out.

  • In the past we have

    • reviewed containers re-vive that - and how does that interact with devices (UDI identification?)

    • review code systems around additives (HL70371 and SCT substance and product hierarchies)

    • started work on cross-mapping between HL7 method codes and SNOMED CT procedure / technique concepts

      • American College of Surgeons is working on procedure protocol and synoptic data elements / surgical synoptic reports - we could work with them together on that

From Chat:

 

Recording:

 

https://youtu.be/7ULU_WD_J-A

Action items

Quick decisions not requiring context or tracking

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Decisions requiring context or tracking

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