2022-02-02 Meeting Notes

XAttendees

X	Riki Merrick	X	Amy Liu
X	Susan Downer	-	Grace Oguntebi
X	Amanda Payne	X	Phylis Stromile
X	Natalie Raketich		Gretl Glick
X	Jamie Patterson		Laura Carlton
X	Emily Augustini		Kandis Brown
X	Pam White		Dave Sanderson
-	Tina Hardin		Benson Chang
-	Jerry Sable	X	Doug York
X	Andy Shotwell

Discussion topics

Item	Presenter	Notes

Item	Presenter	Notes
Agenda Review		TCAMT work Andy will be building out rabies test cases in TCAMT - he maight reach out to Jamie, Amy and Amanda, who all have done some work in TCAMT before (Riki might be too rusty to be useful ) SARS-CoV-2 variant coding Question from FL PHD about keeping the location designation in the Pangolin lineage FSN for s few of the very first codes desision is to remove (also tracked in quick decisions below) also got question about removing the word “variant” from the FSN desision is to keep (also tracked in quick decisions below) should stay for these reasons: we have a shorter preferred name that can be used many program still do queries based on words and including variant covers these Pangolin linage terms and the WHO variant designations (also tracked in quick decisions below) We will create new concepts for the WHO designations (alpha, gamma, delta, etc.) using the SCT concept of SARS-CoV-2 (organism) as their parent and assign these as additional parents to the pangolin lineage terms when appropriate (also tracked in quick decisions below) For now use the SCT concept of SARS-CoV-2 (organism) as as the parent for all extension concepts (we need more lab SME input and understanding of need before spending time updating the parents for sub-lineage terms)
OOO		Vocab Team Calendar
AIMS+ Topics	Benson	no topics
Pulsecheck/Round Robin	All	Vocab Team Resource Dashboard
Confluence Use	Amanda / Riki	this shows how pages are related to each other - we may want to sketch out how we think of our team space and its pages: how they relate to each other and other project/team spaces: https://aphlinformatics.atlassian.net/wiki/download/attachments/360513537/APHL KM Confluence Site Architecture.pdf?api=v2 get guidance from PMO on where the documents should live (on sharepoint or in confluence?)
Show and Tell?		SOP Worthy Topics Jamie will tell us about Exporting IGs from IGAMT - into GVT or word/pdf document next week Sign up to be a presenter for an SOP worthy topic, if you are the one most familiar with the topic, estimate time it will take, and pick a date you might want to present on Review the list of SOP worthy topics and add more (what do you think folks need to know, if they are taking over your work, or what skill do you know one of us has, that you would like to learn more about)
Succession Planning		We did this last week - but if anyone has updates, suggestions, let’s review again https://aphlinformatics.atlassian.net/wiki/download/attachments/915865620/SuccessionPlan.xlsx?api=v2
Issue Review (Time Permitting)		We reviewed this last week and I did a little bit of clean up Issues List from Sharepoint

Links

Review of team member allocations: Project Assignments
PHLIP:
- Link to Smartsheet that tracks COVID-19 implementations: PHLIP Coronavirus PHL Validation Status
- Set of validation rules: CDC Validation Rules
ARLN:
- Collecting lab testing workflow for each lab: CRE/CRPA/CRAB Workflows
OID Management:
- Editable Smartsheets:
  - APHL org facility OIDs
  - APHL system OIDs
- See Vocab Shared Documents and Resources for View-Only reports
Team Retreat Follow-Up: https://docs.google.com/document/d/1U_yQSLn1XbpZ2cXpRaHiy1RCopWuH6nPArMN5X-Gtho/edit

Quick decisions not requiring context or tracking

For quick, smaller decisions that do not require extra context or formal tracking, use the “Add a decision…” function here.

We will remove the location designation in the SARS-CoV-2 FSN for the Panglion lineages, because that is no longer part of the nomenclature
We will keep the word “variant” in the FSN for SARAS-COV-2 pangolin lineage concepts for these reasons: we have a shorter preferred name that can be used many program still do queries based on words and including variant covers these Pangolin linage terms and the WHO variant designations
We will create new concepts for the WHO designations (alpha, gamma, delta, etc.) using the SCT concept of SARS-CoV-2 (organism) as their parent and assign these as additional parents to the pangolin lineage terms when appropriate
For now use the SCT concept of SARS-CoV-2 (organism) as as the parent for all extension concepts (we need more lab SME input and understanding of need before spending time updating the parents for sub-lineage terms)

Decisions requiring context or tracking

For decisions that require more context (e.g., documentation of discussion, options considered) and/or tracking, use the decision template to capture more information.

Create decision from decision template